| version 1.2, 2013/02/09 02:58:14 |
version 1.7, 2016/10/28 02:27:39 |
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| $OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.1 2013/02/08 03:00:32 takayama Exp $ |
$OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.6 2016/02/15 07:42:07 takayama Exp $ |
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| See also OpenXM/src/hgm/note.txt |
See also OpenXM/src/hgm/note.txt |
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| Line 44 See also OpenXM/src/hgm/note.txt |
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| Line 44 See also OpenXM/src/hgm/note.txt |
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| dyn.load("hgm.so") can be used to load shared library by hand. |
dyn.load("hgm.so") can be used to load shared library by hand. |
| getwd() gets the current working directory. |
getwd() gets the current working directory. |
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* Undocumented functions which are removed temporary fro NAMESPACE. 2015.03.24 |
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export(hgm.so3nc) |
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export(hgm.normalizingConstantOfFisherDistributionOnSO3) |
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export(hgm.normalizingConstantOfOrthant) |
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export(hgm.normalizingConstantOfBinghamDistribution) |
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export(hgm.z.mleDemo) |
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export(hgm.ssFB) |
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* Check the memory leak by valgrind and by AddressSanitizer. 2015.04.01 |
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** Valgrind |
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apt-get install valgrind |
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cat >>~/.valgrindrc |
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--leak-check=full |
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--track-origins=yes |
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ctrl-D |
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make clean |
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R CMD check hgm --use-valgrind |
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more hgm.Rcheck/hgm-Ex.Rout |
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Example of an error (Note that there is no error message in *.log) |
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==14813== Conditional jump or move depends on uninitialised value(s) |
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==14813== at 0xCA20170: mh_t (jack-n.c:1361) |
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for (i=0; i<=M_m; i++) { |
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-- snip |
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serror = myabs((partial_sum[i]-partial_sum[i-1])/partial_sum[i-1]); |
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} |
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partial_sum[-1] is accessed! |
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As to details, search "valgrind" in R-exts.pdf |
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* R CMD check hgm --use-gct |
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* Note on building R package: @s/2015/04/05-hgm-r-package-memo.txt |
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;; |
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2016.02.15 testdata. |
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c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,autoplot=1); |
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output is wrong. |
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c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),mode=c(1,1,0)) |
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output is correct. |
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c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),autoplot=1) |
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crashed, but by commented out todo in mh.c, it works. See @s/2016/02 |
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