OpenXM/src/R/r-packages/note.txt - diff

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Diff for /OpenXM/src/R/r-packages/note.txt between version 1.4 and 1.12

-version 1.4, 2015/04/02 00:11:32
+version 1.12, 2022/04/06 01:03:42
 Line 1
 Line 1
 Line 1
- $OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.3 2015/03/24 07:49:06 takayama Exp $
+ $OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.11 2020/02/06 05:58:17 takayama Exp $
  See also OpenXM/src/hgm/note.txt
+ * R package build, reference pages.
+ https://cran.r-project.org/bin/macosx/tools/
+ * Example
+   Edit files in src/hgm
+   cd R/r-packages
+   make rsync
+   R CMD INSTALL hgm
+   Start R and library(hgm)
+   hgm.ncso3()
+   ??hgm
+   ?hgm.ncorthant
+   remove.packages('hgm')
  * C source codes.
   C sources and headers should be developed and edited in the directory
   OpenXM/src/hgm in order to provide a standalone mode without R
-Line 28  See also OpenXM/src/hgm/note.txt
+Line 43  See also OpenXM/src/hgm/note.txt
 Line 28  See also OpenXM/src/hgm/note.txt
 Line 43  See also OpenXM/src/hgm/note.txt
      R CMD INSTALL hgm
          R
          library(hgm)
-         You can check hgm.so3nc by hand.
+         You can check hgm.ncso3 by hand.
      R CMD REMOVE hgm
          It is used to remove the test library.
-Line 39  See also OpenXM/src/hgm/note.txt
+Line 54  See also OpenXM/src/hgm/note.txt
 Line 39  See also OpenXM/src/hgm/note.txt
 Line 54  See also OpenXM/src/hgm/note.txt
     or
      R CMD build --binary hgm  (perhaps, obsolete style)
+ (5) make copy-web-hgm
+    hgm_x.yz.tar.gz
+    [cran submit package] search ==> http://cran.r-project.org/submit.html
  * Notes.
      library.dynam()   shows a list of shared libraries loaded.
      dyn.load("hgm.so") can be used to load shared library by hand.
-Line 63  cat >>~/.valgrindrc
+Line 82  cat >>~/.valgrindrc
 Line 63  cat >>~/.valgrindrc
 Line 82  cat >>~/.valgrindrc
  --track-origins=yes
  ctrl-D
+ make clean
  R CMD check hgm --use-valgrind
  more hgm.Rcheck/hgm-Ex.Rout
  Example of an error (Note that there is no error message in *.log)
-Line 77  Example of an error (Note that there is no error messa
+Line 97  Example of an error (Note that there is no error messa
 Line 77  Example of an error (Note that there is no error messa
 Line 97  Example of an error (Note that there is no error messa
  As to details, search "valgrind" in R-exts.pdf
  * R CMD check hgm --use-gct
+ * Note on building R package: @s/2015/04/05-hgm-r-package-memo.txt
+ ;;
+.02.15  testdata.
+ c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,autoplot=1);
+   output is wrong.
+ c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),mode=c(1,1,0))
+   output is correct.
+ c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),autoplot=1)
+   crashed, but by commented out todo in mh.c, it works. See @s/2016/02
+ ;;
+ http://kbroman.org/pkg_primer/pages/cran.html
+ R CMD check hgm --as-cran
+ ;;
+.02.06  Installing r-devel
+  apt-get install subversion ccache
+  apt-get install xorg-dev
+  apt-get install libcurl4-openssl-dev
+  apt install libpcre2-dev    (2022.04.06  this22/R orange3m)
+  pushd ~/this19/R  (for example)
+  svn co https://svn.r-project.org/R/trunk r-devel/R
+  cd r-devel/R   and follow the INSTALL
+  ./configure --without-recommended-packages  --prefix ~/this19/R
+  make
+  export PATH=~/this19/R/r-devel/R/bin:$PATH
+ Valgrid can be used by
+    valgrind ./a.out
+ A sample:  main() { int n;  if (n>0) n=0; }

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