version 1.4, 2000/01/11 05:17:11 |
version 1.13, 2000/01/17 08:50:56 |
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% $OpenXM: OpenXM/doc/issac2000/homogeneous-network.tex,v 1.3 2000/01/07 06:27:55 noro Exp $ |
% $OpenXM: OpenXM/doc/issac2000/homogeneous-network.tex,v 1.12 2000/01/17 08:06:15 noro Exp $ |
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\section{Applications} |
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\subsection{Distributed computation with homogeneous servers} |
\subsection{Distributed computation with homogeneous servers} |
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\label{section:homog} |
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OpenXM also aims at speedup by a distributed computation |
One of the aims of OpenXM is a parallel speedup by a distributed computation |
with homogeneous servers. As the current specification of OpenXM does |
with homogeneous servers. As the current specification of OpenXM does |
not include communication between servers, one cannot expect |
not include communication between servers, one cannot expect |
the maximal parallel speedup. However it is possible to execute |
the maximal parallel speedup. However it is possible to execute |
Line 17 by FFT over small finite fields and Chinese remainder |
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Line 17 by FFT over small finite fields and Chinese remainder |
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It can be easily parallelized: |
It can be easily parallelized: |
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\begin{tabbing} |
\begin{tabbing} |
Input :\= $f_1, f_2 \in Z[x]$\\ |
Input :\= $f_1, f_2 \in {\bf Z}[x]$ such that $deg(f_1), deg(f_2) < 2^M$\\ |
\> such that $deg(f_1), deg(f_2) < 2^M$\\ |
Output : $f = f_1f_2$ \\ |
Output : $f = f_1f_2 \bmod p$\\ |
$P \leftarrow$ \= $\{m_1,\cdots,m_N\}$ where $m_i$ is an odd prime, \\ |
$P \leftarrow$ \= $\{m_1,\cdots,m_N\}$ where $m_i$ is a prime, \\ |
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\> $2^{M+1}|m_i-1$ and $m=\prod m_i $ is sufficiently large. \\ |
\> $2^{M+1}|m_i-1$ and $m=\prod m_i $ is sufficiently large. \\ |
Separate $P$ into disjoint subsets $P_1, \cdots, P_L$.\\ |
Separate $P$ into disjoint subsets $P_1, \cdots, P_L$.\\ |
for \= $j=1$ to $L$ $M_j \leftarrow \prod_{m_i\in P_j} m_i$\\ |
for \= $j=1$ to $L$ $M_j \leftarrow \prod_{m_i\in P_j} m_i$\\ |
Compute $F_j$ such that $F_j \equiv f_1f_2 \bmod M_j$\\ |
Compute $F_j$ such that $F_j \equiv f_1f_2 \bmod M_j$\\ |
\> and $F_j \equiv 0 \bmod m/M_j$ in parallel.\\ |
\> and $F_j \equiv 0 \bmod m/M_j$ in parallel.\\ |
\> ($f_1, f_2$ are regarded as integral.\\ |
\> (The product is computed by FFT.)\\ |
\> The product is computed by FFT.)\\ |
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return $\phi_m(\sum F_j)$\\ |
return $\phi_m(\sum F_j)$\\ |
(For $a \in Z$, $\phi_m(a) \in (-m/2,m/2)$ and $\phi_m(a)\equiv a \bmod m$) |
(For $a \in {\bf Z}$, $\phi_m(a) \in (-m/2,m/2)$ and $\phi_m(a)\equiv a \bmod m$) |
\end{tabbing} |
\end{tabbing} |
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Figure \ref{speedup} |
Figure \ref{speedup} |
shows the speedup factor under the above distributed computation |
shows the speedup factor under the above distributed computation |
on {\tt Risa/Asir}. For each $n$, two polynomials of degree $n$ |
on Risa/Asir. For each $n$, two polynomials of degree $n$ |
with 3000bit coefficients are generated and the product is computed. |
with 3000bit coefficients are generated and the product is computed. |
The machine is Fujitsu AP3000, |
The machine is FUJITSU AP3000, |
a cluster of Sun connected with a high speed network and MPI over the |
a cluster of Sun workstations connected with a high speed network |
network is used to implement OpenXM. |
and MPI over the network is used to implement OpenXM. |
\begin{figure}[htbp] |
\begin{figure}[htbp] |
\epsfxsize=8.5cm |
\epsfxsize=8.5cm |
\epsffile{speedup.ps} |
\epsffile{speedup.ps} |
Line 46 network is used to implement OpenXM. |
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Line 44 network is used to implement OpenXM. |
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\label{speedup} |
\label{speedup} |
\end{figure} |
\end{figure} |
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The task of a client is the generation and partition of $P$, sending |
If the number of servers is $L$ and the inputs are fixed, then the cost to |
and receiving of polynomials and the synthesis of the result. If the |
compute $F_j$ in parallel is $O(1/L)$, whereas the cost |
number of servers is $L$ and the inputs are fixed, then the time to |
to send and receive polynomials is $O(L)$ if {\tt ox\_push\_cmo()} and |
compute $F_j$ in parallel is proportional to $1/L$, whereas the time |
{\tt ox\_pop\_cmo()} are repeatedly applied on the client. |
for sending and receiving of polynomials is proportional to $L$ |
Therefore the speedup is limited and the upper bound of |
because we don't have the broadcast and the reduce |
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operations. Therefore the speedup is limited and the upper bound of |
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the speedup factor depends on the ratio of |
the speedup factor depends on the ratio of |
the computational cost and the communication cost. |
the computational cost and the communication cost for each unit operation. |
Figure \ref{speedup} shows that |
Figure \ref{speedup} shows that |
the speedup is satisfactory if the degree is large and the number of |
the speedup is satisfactory if the degree is large and $L$ |
servers is not large, say, up to 10 under the above envionment. |
is not large, say, up to 10 under the above environment. |
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If OpenXM provides operations for the broadcast and the reduction |
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such as {\tt MPI\_Bcast} and {\tt MPI\_Reduce} respectively, the cost of |
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sending $f_1$, $f_2$ and gathering $F_j$ may be reduced to $O(\log_2L)$ |
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and we can expect better results in such a case. |
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\subsubsection{Gr\"obner basis computation by various methods} |
\subsubsection{Competitive distributed computation by various strategies} |
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Singular \cite{Singular} implements {\tt MP} interface for distributed |
SINGULAR \cite{Singular} implements {\it MP} interface for distributed |
computation and a competitive Gr\"obner basis computation is |
computation and a competitive Gr\"obner basis computation is |
illustrated as an example of distributed computation. However, |
illustrated as an example of distributed computation. |
interruption has not implemented yet and the looser process have to be |
Such a distributed computation is also possible on OpenXM. |
killed explicitly. As stated in Section \ref{secsession} OpenXM |
The following Risa/Asir function computes a Gr\"obner basis by |
provides such a function and one can safely reset the server and |
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continue to use it. Furthermore, if a client provides synchronous I/O |
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multiplexing by {\tt select()}, then a polling is not necessary. The |
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following {\tt Risa/Asir} function computes a Gr\"obner basis by |
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starting the computations simultaneously from the homogenized input and |
starting the computations simultaneously from the homogenized input and |
the input itself. The client watches the streams by {\tt ox\_select()} |
the input itself. The client watches the streams by {\tt ox\_select()} |
and The result which is returned first is taken. Then the remaining |
and the result which is returned first is taken. Then the remaining |
server is reset. |
server is reset. |
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\begin{verbatim} |
\begin{verbatim} |