This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2013.3.16) 19 MAR 2014 13:56 entering extended mode restricted \write18 enabled. file:line:error style messages enabled. %&-line parsing enabled. **/private/var/folders/dz/dz-rCNOVF5usf8YGr4lR-++++TM/-Tmp-/Rtmp7YOHzj/Rd2pdf3f d233e3/Rd2.tex (/private/var/folders/dz/dz-rCNOVF5usf8YGr4lR-++++TM/-Tmp-/Rtmp7YOHzj/Rd2pdf3fd 233e3/Rd2.tex LaTeX2e <2011/06/27> Babel and hyphenation patterns for english, dumylang, nohyphenation, ge rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, polish, portuguese, romanian, romansh, russian, sanskrit, serbian, serbianc, s lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh, loaded. (/usr/local/texlive/2012/texmf-dist/tex/latex/base/book.cls Document Class: book 2007/10/19 v1.4h Standard LaTeX document class (/usr/local/texlive/2012/texmf-dist/tex/latex/base/bk10.clo File: bk10.clo 2007/10/19 v1.4h Standard LaTeX file (size option) ) \c@part=\count79 \c@chapter=\count80 \c@section=\count81 \c@subsection=\count82 \c@subsubsection=\count83 \c@paragraph=\count84 \c@subparagraph=\count85 \c@figure=\count86 \c@table=\count87 \abovecaptionskip=\skip41 \belowcaptionskip=\skip42 \bibindent=\dimen102 ) (/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty Package: Rd (/usr/local/texlive/2012/texmf-dist/tex/latex/base/ifthen.sty Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC) ) (/usr/local/texlive/2012/texmf-dist/tex/latex/tools/longtable.sty Package: longtable 2004/02/01 v4.11 Multi-page Table package (DPC) \LTleft=\skip43 \LTright=\skip44 \LTpre=\skip45 \LTpost=\skip46 \LTchunksize=\count88 \LTcapwidth=\dimen103 \LT@head=\box26 \LT@firsthead=\box27 \LT@foot=\box28 \LT@lastfoot=\box29 \LT@cols=\count89 \LT@rows=\count90 \c@LT@tables=\count91 \c@LT@chunks=\count92 \LT@p@ftn=\toks14 ) (/usr/local/texlive/2012/texmf-dist/tex/latex/tools/bm.sty Package: bm 2004/02/26 v1.1c Bold Symbol Support (DPC/FMi) \symboldoperators=\mathgroup4 \symboldletters=\mathgroup5 \symboldsymbols=\mathgroup6 LaTeX Font Info: Redeclaring math alphabet \mathbf on input line 138. LaTeX Info: Redefining \bm on input line 204. ) (/usr/local/texlive/2012/texmf-dist/tex/latex/base/alltt.sty Package: alltt 1997/06/16 v2.0g defines alltt environment ) (/usr/local/texlive/2012/texmf-dist/tex/latex/tools/verbatim.sty Package: verbatim 2003/08/22 v1.5q LaTeX2e package for verbatim enhancements \every@verbatim=\toks15 \verbatim@line=\toks16 \verbatim@in@stream=\read1 ) (/usr/local/texlive/2012/texmf-dist/tex/latex/url/url.sty \Urlmuskip=\muskip10 Package: url 2006/04/12 ver 3.3 Verb mode for urls, etc. ) (/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/upquote.sty Package: upquote 2003/08/11 v1.1 Covington's upright-quote modification to verb atim and verb (/usr/local/texlive/2012/texmf-dist/tex/latex/base/textcomp.sty Package: textcomp 2005/09/27 v1.99g Standard LaTeX package Package textcomp Info: Sub-encoding information: (textcomp) 5 = only ISO-Adobe without \textcurrency (textcomp) 4 = 5 + \texteuro (textcomp) 3 = 4 + \textohm (textcomp) 2 = 3 + \textestimated + \textcurrency (textcomp) 1 = TS1 - \textcircled - \t (textcomp) 0 = TS1 (full) (textcomp) Font families with sub-encoding setting implement (textcomp) only a restricted character set as indicated. (textcomp) Family '?' is the default used for unknown fonts. (textcomp) See the documentation for details. Package textcomp Info: Setting ? sub-encoding to TS1/1 on input line 71. (/usr/local/texlive/2012/texmf-dist/tex/latex/base/ts1enc.def File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file ) LaTeX Info: Redefining \oldstylenums on input line 266. Package textcomp Info: Setting cmr sub-encoding to TS1/0 on input line 281. Package textcomp Info: Setting cmss sub-encoding to TS1/0 on input line 282. Package textcomp Info: Setting cmtt sub-encoding to TS1/0 on input line 283. Package textcomp Info: Setting cmvtt sub-encoding to TS1/0 on input line 284. Package textcomp Info: Setting cmbr sub-encoding to TS1/0 on input line 285. Package textcomp Info: Setting cmtl sub-encoding to TS1/0 on input line 286. Package textcomp Info: Setting ccr sub-encoding to TS1/0 on input line 287. Package textcomp Info: Setting ptm sub-encoding to TS1/4 on input line 288. Package textcomp Info: Setting pcr sub-encoding to TS1/4 on input line 289. Package textcomp Info: Setting phv sub-encoding to TS1/4 on input line 290. Package textcomp Info: Setting ppl sub-encoding to TS1/3 on input line 291. Package textcomp Info: Setting pag sub-encoding to TS1/4 on input line 292. Package textcomp Info: Setting pbk sub-encoding to TS1/4 on input line 293. Package textcomp Info: Setting pnc sub-encoding to TS1/4 on input line 294. Package textcomp Info: Setting pzc sub-encoding to TS1/4 on input line 295. Package textcomp Info: Setting bch sub-encoding to TS1/4 on input line 296. Package textcomp Info: Setting put sub-encoding to TS1/5 on input line 297. Package textcomp Info: Setting uag sub-encoding to TS1/5 on input line 298. Package textcomp Info: Setting ugq sub-encoding to TS1/5 on input line 299. Package textcomp Info: Setting ul8 sub-encoding to TS1/4 on input line 300. Package textcomp Info: Setting ul9 sub-encoding to TS1/4 on input line 301. Package textcomp Info: Setting augie sub-encoding to TS1/5 on input line 302. Package textcomp Info: Setting dayrom sub-encoding to TS1/3 on input line 303. Package textcomp Info: Setting dayroms sub-encoding to TS1/3 on input line 304. Package textcomp Info: Setting pxr sub-encoding to TS1/0 on input line 305. Package textcomp Info: Setting pxss sub-encoding to TS1/0 on input line 306. Package textcomp Info: Setting pxtt sub-encoding to TS1/0 on input line 307. Package textcomp Info: Setting txr sub-encoding to TS1/0 on input line 308. Package textcomp Info: Setting txss sub-encoding to TS1/0 on input line 309. Package textcomp Info: Setting txtt sub-encoding to TS1/0 on input line 310. Package textcomp Info: Setting lmr sub-encoding to TS1/0 on input line 311. Package textcomp Info: Setting lmdh sub-encoding to TS1/0 on input line 312. Package textcomp Info: Setting lmss sub-encoding to TS1/0 on input line 313. Package textcomp Info: Setting lmssq sub-encoding to TS1/0 on input line 314. Package textcomp Info: Setting lmvtt sub-encoding to TS1/0 on input line 315. Package textcomp Info: Setting qhv sub-encoding to TS1/0 on input line 316. Package textcomp Info: Setting qag sub-encoding to TS1/0 on input line 317. Package textcomp Info: Setting qbk sub-encoding to TS1/0 on input line 318. Package textcomp Info: Setting qcr sub-encoding to TS1/0 on input line 319. Package textcomp Info: Setting qcs sub-encoding to TS1/0 on input line 320. Package textcomp Info: Setting qpl sub-encoding to TS1/0 on input line 321. Package textcomp Info: Setting qtm sub-encoding to TS1/0 on input line 322. Package textcomp Info: Setting qzc sub-encoding to TS1/0 on input line 323. Package textcomp Info: Setting qhvc sub-encoding to TS1/0 on input line 324. Package textcomp Info: Setting futs sub-encoding to TS1/4 on input line 325. Package textcomp Info: Setting futx sub-encoding to TS1/4 on input line 326. Package textcomp Info: Setting futj sub-encoding to TS1/4 on input line 327. Package textcomp Info: Setting hlh sub-encoding to TS1/3 on input line 328. Package textcomp Info: Setting hls sub-encoding to TS1/3 on input line 329. Package textcomp Info: Setting hlst sub-encoding to TS1/3 on input line 330. Package textcomp Info: Setting hlct sub-encoding to TS1/5 on input line 331. Package textcomp Info: Setting hlx sub-encoding to TS1/5 on input line 332. Package textcomp Info: Setting hlce sub-encoding to TS1/5 on input line 333. Package textcomp Info: Setting hlcn sub-encoding to TS1/5 on input line 334. Package textcomp Info: Setting hlcw sub-encoding to TS1/5 on input line 335. Package textcomp Info: Setting hlcf sub-encoding to TS1/5 on input line 336. Package textcomp Info: Setting pplx sub-encoding to TS1/3 on input line 337. Package textcomp Info: Setting pplj sub-encoding to TS1/3 on input line 338. Package textcomp Info: Setting ptmx sub-encoding to TS1/4 on input line 339. Package textcomp Info: Setting ptmj sub-encoding to TS1/4 on input line 340. )) \ldescriptionwidth=\skip47 NOT loading ae (/usr/local/texlive/2012/texmf-dist/tex/latex/base/fontenc.sty Package: fontenc 2005/09/27 v1.99g Standard LaTeX package (/usr/local/texlive/2012/texmf-dist/tex/latex/base/t1enc.def File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file LaTeX Font Info: Redeclaring font encoding T1 on input line 43. )) (/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/times.sty Package: times 2005/04/12 PSNFSS-v9.2a (SPQR) ) NOT loading lmodern (/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/color.sty Package: color 2005/11/14 v1.0j Standard LaTeX Color (DPC) (/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/color.cfg File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive ) Package color Info: Driver file: pdftex.def on input line 130. (/usr/local/texlive/2012/texmf-dist/tex/latex/pdftex-def/pdftex.def File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/infwarerr.sty Package: infwarerr 2010/04/08 v1.3 Providing info/warning/error messages (HO) ) (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ltxcmds.sty Package: ltxcmds 2011/11/09 v1.22 LaTeX kernel commands for general use (HO) ) \Gread@gobject=\count93 )) (/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/hyperref.sty Package: hyperref 2012/05/13 v6.82q Hypertext links for LaTeX (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty Package: hobsub-hyperref 2012/05/28 v1.13 Bundle oberdiek, subset hyperref (HO) (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty Package: hobsub-generic 2012/05/28 v1.13 Bundle oberdiek, subset generic (HO) Package: hobsub 2012/05/28 v1.13 Construct package bundles (HO) Package hobsub Info: Skipping package `infwarerr' (already loaded). Package hobsub Info: Skipping package `ltxcmds' (already loaded). Package: ifluatex 2010/03/01 v1.3 Provides the ifluatex switch (HO) Package ifluatex Info: LuaTeX not detected. Package: ifvtex 2010/03/01 v1.5 Detect VTeX and its facilities (HO) Package ifvtex Info: VTeX not detected. Package: intcalc 2007/09/27 v1.1 Expandable calculations with integers (HO) Package: ifpdf 2011/01/30 v2.3 Provides the ifpdf switch (HO) Package ifpdf Info: pdfTeX in PDF mode is detected. Package: etexcmds 2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO) Package etexcmds Info: Could not find \expanded. (etexcmds) That can mean that you are not using pdfTeX 1.50 or (etexcmds) that some package has redefined \expanded. (etexcmds) In the latter case, load this package earlier. Package: kvsetkeys 2012/04/25 v1.16 Key value parser (HO) Package: kvdefinekeys 2011/04/07 v1.3 Define keys (HO) Package: pdftexcmds 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO ) Package pdftexcmds Info: LuaTeX not detected. Package pdftexcmds Info: \pdf@primitive is available. Package pdftexcmds Info: \pdf@ifprimitive is available. Package pdftexcmds Info: \pdfdraftmode found. Package: pdfescape 2011/11/25 v1.13 Implements pdfTeX's escape features (HO) Package: bigintcalc 2012/04/08 v1.3 Expandable calculations on big integers (HO ) Package: bitset 2011/01/30 v1.1 Handle bit-vector datatype (HO) Package: uniquecounter 2011/01/30 v1.2 Provide unlimited unique counter (HO) ) Package hobsub Info: Skipping package `hobsub' (already loaded). Package: letltxmacro 2010/09/02 v1.4 Let assignment for LaTeX macros (HO) Package: hopatch 2012/05/28 v1.2 Wrapper for package hooks (HO) Package: xcolor-patch 2011/01/30 xcolor patch Package: atveryend 2011/06/30 v1.8 Hooks at the very end of document (HO) Package atveryend Info: \enddocument detected (standard20110627). Package: atbegshi 2011/10/05 v1.16 At begin shipout hook (HO) Package: refcount 2011/10/16 v3.4 Data extraction from label references (HO) Package: hycolor 2011/01/30 v1.7 Color options for hyperref/bookmark (HO) ) (/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/keyval.sty Package: keyval 1999/03/16 v1.13 key=value parser (DPC) \KV@toks@=\toks17 ) (/usr/local/texlive/2012/texmf-dist/tex/generic/ifxetex/ifxetex.sty Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional ) (/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/kvoptions.sty Package: kvoptions 2011/06/30 v3.11 Key value format for package options (HO) ) \@linkdim=\dimen104 \Hy@linkcounter=\count94 \Hy@pagecounter=\count95 (/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/pd1enc.def File: pd1enc.def 2012/05/13 v6.82q Hyperref: PDFDocEncoding definition (HO) ) \Hy@SavedSpaceFactor=\count96 (/usr/local/texlive/2012/texmf-dist/tex/latex/latexconfig/hyperref.cfg File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive ) Package hyperref Info: Hyper figures OFF on input line 4062. Package hyperref Info: Link nesting OFF on input line 4067. Package hyperref Info: Hyper index ON on input line 4070. Package hyperref Info: Plain pages OFF on input line 4077. Package hyperref Info: Backreferencing OFF on input line 4082. Package hyperref Info: Implicit mode ON; LaTeX internals redefined. Package hyperref Info: Bookmarks ON on input line 4300. LaTeX Info: Redefining \href on input line 4564. \c@Hy@tempcnt=\count97 LaTeX Info: Redefining \url on input line 4653. \Fld@menulength=\count98 \Field@Width=\dimen105 \Fld@charsize=\dimen106 Package hyperref Info: Hyper figures OFF on input line 5773. Package hyperref Info: Link nesting OFF on input line 5778. Package hyperref Info: Hyper index ON on input line 5781. Package hyperref Info: backreferencing OFF on input line 5788. Package hyperref Info: Link coloring OFF on input line 5793. Package hyperref Info: Link coloring with OCG OFF on input line 5798. Package hyperref Info: PDF/A mode OFF on input line 5803. LaTeX Info: Redefining \ref on input line 5843. LaTeX Info: Redefining \pageref on input line 5847. \Hy@abspage=\count99 \c@Item=\count100 \c@Hfootnote=\count101 ) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/hpdftex.def File: hpdftex.def 2012/05/13 v6.82q Hyperref driver for pdfTeX \Fld@listcount=\count102 \c@bookmark@seq@number=\count103 (/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty Package: rerunfilecheck 2011/04/15 v1.7 Rerun checks for auxiliary files (HO) Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2 82. ) \Hy@SectionHShift=\skip48 ) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 332. Package hyperref Info: Option `colorlinks' set `true' on input line 332. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 332. Package hyperref Info: Option `linktocpage' set `true' on input line 332. Package hyperref Info: Option `plainpages' set `false' on input line 332. ) (/usr/local/texlive/2012/texmf-dist/tex/latex/base/makeidx.sty Package: makeidx 2000/03/29 v1.0m Standard LaTeX package ) (/usr/local/texlive/2012/texmf-dist/tex/latex/base/inputenc.sty Package: inputenc 2008/03/30 v1.1d Input encoding file \inpenc@prehook=\toks18 \inpenc@posthook=\toks19 (/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def File: utf8.def 2008/04/05 v1.1m UTF-8 support for inputenc Now handling font encoding OML ... ... no UTF-8 mapping file for font encoding OML Now handling font encoding T1 ... ... processing UTF-8 mapping file for font encoding T1 (/usr/local/texlive/2012/texmf-dist/tex/latex/base/t1enc.dfu File: t1enc.dfu 2008/04/05 v1.1m UTF-8 support for inputenc defining Unicode char U+00A1 (decimal 161) defining Unicode char U+00A3 (decimal 163) defining Unicode char U+00AB (decimal 171) defining Unicode char U+00BB (decimal 187) defining Unicode char U+00BF (decimal 191) defining Unicode char U+00C0 (decimal 192) defining Unicode char U+00C1 (decimal 193) defining Unicode char U+00C2 (decimal 194) defining Unicode char U+00C3 (decimal 195) defining Unicode char U+00C4 (decimal 196) defining Unicode char U+00C5 (decimal 197) defining Unicode char U+00C6 (decimal 198) defining Unicode char U+00C7 (decimal 199) defining Unicode char U+00C8 (decimal 200) defining Unicode char U+00C9 (decimal 201) defining Unicode char U+00CA (decimal 202) defining Unicode char U+00CB (decimal 203) defining Unicode char U+00CC (decimal 204) defining Unicode char U+00CD (decimal 205) defining Unicode char U+00CE (decimal 206) defining Unicode char U+00CF (decimal 207) defining Unicode char U+00D0 (decimal 208) defining Unicode char U+00D1 (decimal 209) defining Unicode char U+00D2 (decimal 210) defining Unicode char U+00D3 (decimal 211) defining Unicode char U+00D4 (decimal 212) defining Unicode char U+00D5 (decimal 213) defining Unicode char U+00D6 (decimal 214) defining Unicode char U+00D8 (decimal 216) defining Unicode char U+00D9 (decimal 217) defining Unicode char U+00DA (decimal 218) defining Unicode char U+00DB (decimal 219) defining Unicode char U+00DC (decimal 220) defining Unicode char U+00DD (decimal 221) defining Unicode char U+00DE (decimal 222) defining Unicode char U+00DF (decimal 223) defining Unicode char U+00E0 (decimal 224) defining Unicode char U+00E1 (decimal 225) defining Unicode char U+00E2 (decimal 226) defining Unicode char U+00E3 (decimal 227) defining Unicode char U+00E4 (decimal 228) defining Unicode char U+00E5 (decimal 229) defining Unicode char U+00E6 (decimal 230) defining Unicode char U+00E7 (decimal 231) defining Unicode char U+00E8 (decimal 232) defining Unicode char U+00E9 (decimal 233) defining Unicode char U+00EA (decimal 234) defining Unicode char U+00EB (decimal 235) defining Unicode char U+00EC (decimal 236) defining Unicode char U+00ED (decimal 237) defining Unicode char U+00EE (decimal 238) defining Unicode char U+00EF (decimal 239) defining Unicode char U+00F0 (decimal 240) defining Unicode char U+00F1 (decimal 241) defining Unicode char U+00F2 (decimal 242) defining Unicode char U+00F3 (decimal 243) defining Unicode char U+00F4 (decimal 244) defining Unicode char U+00F5 (decimal 245) defining Unicode char U+00F6 (decimal 246) defining Unicode char U+00F8 (decimal 248) defining Unicode char U+00F9 (decimal 249) defining Unicode char U+00FA (decimal 250) defining Unicode char U+00FB (decimal 251) defining Unicode char U+00FC (decimal 252) defining Unicode char U+00FD (decimal 253) defining Unicode char U+00FE (decimal 254) defining Unicode char U+00FF (decimal 255) defining Unicode char U+0102 (decimal 258) defining Unicode char U+0103 (decimal 259) defining Unicode char U+0104 (decimal 260) defining Unicode char U+0105 (decimal 261) defining Unicode char U+0106 (decimal 262) defining Unicode char U+0107 (decimal 263) defining Unicode char U+010C (decimal 268) defining Unicode char U+010D (decimal 269) defining Unicode char U+010E (decimal 270) defining Unicode char U+010F (decimal 271) defining Unicode char U+0110 (decimal 272) defining Unicode char U+0111 (decimal 273) defining Unicode char U+0118 (decimal 280) defining Unicode char U+0119 (decimal 281) defining Unicode char U+011A (decimal 282) defining Unicode char U+011B (decimal 283) defining Unicode char U+011E (decimal 286) defining Unicode char U+011F (decimal 287) defining Unicode char U+0130 (decimal 304) defining Unicode char U+0131 (decimal 305) defining Unicode char U+0132 (decimal 306) defining Unicode char U+0133 (decimal 307) defining Unicode char U+0139 (decimal 313) defining Unicode char U+013A (decimal 314) defining Unicode char U+013D (decimal 317) defining Unicode char U+013E (decimal 318) defining Unicode char U+0141 (decimal 321) defining Unicode char U+0142 (decimal 322) defining Unicode char U+0143 (decimal 323) defining Unicode char U+0144 (decimal 324) defining Unicode char U+0147 (decimal 327) defining Unicode char U+0148 (decimal 328) defining Unicode char U+014A (decimal 330) defining Unicode char U+014B (decimal 331) defining Unicode char U+0150 (decimal 336) defining Unicode char U+0151 (decimal 337) defining Unicode char U+0152 (decimal 338) defining Unicode char U+0153 (decimal 339) defining Unicode char U+0154 (decimal 340) defining Unicode char U+0155 (decimal 341) defining Unicode char U+0158 (decimal 344) defining Unicode char U+0159 (decimal 345) defining Unicode char U+015A (decimal 346) defining Unicode char U+015B (decimal 347) defining Unicode char U+015E (decimal 350) defining Unicode char U+015F (decimal 351) defining Unicode char U+0160 (decimal 352) defining Unicode char U+0161 (decimal 353) defining Unicode char U+0162 (decimal 354) defining Unicode char U+0163 (decimal 355) defining Unicode char U+0164 (decimal 356) defining Unicode char U+0165 (decimal 357) defining Unicode char U+016E (decimal 366) defining Unicode char U+016F (decimal 367) defining Unicode char U+0170 (decimal 368) defining Unicode char U+0171 (decimal 369) defining Unicode char U+0178 (decimal 376) defining Unicode char U+0179 (decimal 377) defining Unicode char U+017A (decimal 378) defining Unicode char U+017B (decimal 379) defining Unicode char U+017C (decimal 380) defining Unicode char U+017D (decimal 381) defining Unicode char U+017E (decimal 382) defining Unicode char U+200C (decimal 8204) defining Unicode char U+2013 (decimal 8211) defining Unicode char U+2014 (decimal 8212) defining Unicode char U+2018 (decimal 8216) defining Unicode char U+2019 (decimal 8217) defining Unicode char U+201A (decimal 8218) defining Unicode char U+201C (decimal 8220) defining Unicode char U+201D (decimal 8221) defining Unicode char U+201E (decimal 8222) defining Unicode char U+2030 (decimal 8240) defining Unicode char U+2031 (decimal 8241) defining Unicode char U+2039 (decimal 8249) defining Unicode char U+203A (decimal 8250) defining Unicode char U+2423 (decimal 9251) ) Now handling font encoding OT1 ... ... processing UTF-8 mapping file for font encoding OT1 (/usr/local/texlive/2012/texmf-dist/tex/latex/base/ot1enc.dfu File: ot1enc.dfu 2008/04/05 v1.1m UTF-8 support for inputenc defining Unicode char U+00A1 (decimal 161) defining Unicode char U+00A3 (decimal 163) defining Unicode char U+00B8 (decimal 184) defining Unicode char U+00BF (decimal 191) defining Unicode char U+00C5 (decimal 197) defining Unicode char U+00C6 (decimal 198) defining Unicode char U+00D8 (decimal 216) defining Unicode char U+00DF (decimal 223) defining Unicode char U+00E6 (decimal 230) defining Unicode char U+00EC (decimal 236) defining Unicode char U+00ED (decimal 237) defining Unicode char U+00EE (decimal 238) defining Unicode char U+00EF (decimal 239) defining Unicode char U+00F8 (decimal 248) defining Unicode char U+0131 (decimal 305) defining Unicode char U+0141 (decimal 321) defining Unicode char U+0142 (decimal 322) defining Unicode char U+0152 (decimal 338) defining Unicode char U+0153 (decimal 339) defining Unicode char U+2013 (decimal 8211) defining Unicode char U+2014 (decimal 8212) defining Unicode char U+2018 (decimal 8216) defining Unicode char U+2019 (decimal 8217) defining Unicode char U+201C (decimal 8220) defining Unicode char U+201D (decimal 8221) ) Now handling font encoding OMS ... ... processing UTF-8 mapping file for font encoding OMS (/usr/local/texlive/2012/texmf-dist/tex/latex/base/omsenc.dfu File: omsenc.dfu 2008/04/05 v1.1m UTF-8 support for inputenc defining Unicode char U+00A7 (decimal 167) defining Unicode char U+00B6 (decimal 182) defining Unicode char U+00B7 (decimal 183) defining Unicode char U+2020 (decimal 8224) defining Unicode char U+2021 (decimal 8225) defining Unicode char U+2022 (decimal 8226) ) Now handling font encoding OMX ... ... no UTF-8 mapping file for font encoding OMX Now handling font encoding U ... ... no UTF-8 mapping file for font encoding U Now handling font encoding TS1 ... ... processing UTF-8 mapping file for font encoding TS1 (/usr/local/texlive/2012/texmf-dist/tex/latex/base/ts1enc.dfu File: ts1enc.dfu 2008/04/05 v1.1m UTF-8 support for inputenc defining Unicode char U+00A2 (decimal 162) defining Unicode char U+00A3 (decimal 163) defining Unicode char U+00A4 (decimal 164) defining Unicode char U+00A5 (decimal 165) defining Unicode char U+00A6 (decimal 166) defining Unicode char U+00A7 (decimal 167) defining Unicode char U+00A8 (decimal 168) defining Unicode char U+00A9 (decimal 169) defining Unicode char U+00AA (decimal 170) defining Unicode char U+00AC (decimal 172) defining Unicode char U+00AE (decimal 174) defining Unicode char U+00AF (decimal 175) defining Unicode char U+00B0 (decimal 176) defining Unicode char U+00B1 (decimal 177) defining Unicode char U+00B2 (decimal 178) defining Unicode char U+00B3 (decimal 179) defining Unicode char U+00B4 (decimal 180) defining Unicode char U+00B5 (decimal 181) defining Unicode char U+00B6 (decimal 182) defining Unicode char U+00B7 (decimal 183) defining Unicode char U+00B9 (decimal 185) defining Unicode char U+00BA (decimal 186) defining Unicode char U+00BC (decimal 188) defining Unicode char U+00BD (decimal 189) defining Unicode char U+00BE (decimal 190) defining Unicode char U+00D7 (decimal 215) defining Unicode char U+00F7 (decimal 247) defining Unicode char U+0192 (decimal 402) defining Unicode char U+02C7 (decimal 711) defining Unicode char U+02D8 (decimal 728) defining Unicode char U+02DD (decimal 733) defining Unicode char U+0E3F (decimal 3647) defining Unicode char U+2016 (decimal 8214) defining Unicode char U+2020 (decimal 8224) defining Unicode char U+2021 (decimal 8225) defining Unicode char U+2022 (decimal 8226) defining Unicode char U+2030 (decimal 8240) defining Unicode char U+2031 (decimal 8241) defining Unicode char U+203B (decimal 8251) defining Unicode char U+203D (decimal 8253) defining Unicode char U+2044 (decimal 8260) defining Unicode char U+204E (decimal 8270) defining Unicode char U+2052 (decimal 8274) defining Unicode char U+20A1 (decimal 8353) defining Unicode char U+20A4 (decimal 8356) defining Unicode char U+20A6 (decimal 8358) defining Unicode char U+20A9 (decimal 8361) defining Unicode char U+20AB (decimal 8363) defining Unicode char U+20AC (decimal 8364) defining Unicode char U+20B1 (decimal 8369) defining Unicode char U+2103 (decimal 8451) defining Unicode char U+2116 (decimal 8470) defining Unicode char U+2117 (decimal 8471) defining Unicode char U+211E (decimal 8478) defining Unicode char U+2120 (decimal 8480) defining Unicode char U+2122 (decimal 8482) defining Unicode char U+2126 (decimal 8486) defining Unicode char U+2127 (decimal 8487) defining Unicode char U+212E (decimal 8494) defining Unicode char U+2190 (decimal 8592) defining Unicode char U+2191 (decimal 8593) defining Unicode char U+2192 (decimal 8594) defining Unicode char U+2193 (decimal 8595) defining Unicode char U+2329 (decimal 9001) defining Unicode char U+232A (decimal 9002) defining Unicode char U+2422 (decimal 9250) defining Unicode char U+25E6 (decimal 9702) defining Unicode char U+25EF (decimal 9711) defining Unicode char U+266A (decimal 9834) ) Now handling font encoding PD1 ... ... no UTF-8 mapping file for font encoding PD1 defining Unicode char U+00A9 (decimal 169) defining Unicode char U+00AA (decimal 170) defining Unicode char U+00AE (decimal 174) defining Unicode char U+00BA (decimal 186) defining Unicode char U+02C6 (decimal 710) defining Unicode char U+02DC (decimal 732) defining Unicode char U+200C (decimal 8204) defining Unicode char U+2026 (decimal 8230) defining Unicode char U+2122 (decimal 8482) defining Unicode char U+2423 (decimal 9251) ) (/usr/local/texlive/2012/texmf-dist/tex/latex/base/latin1.def File: latin1.def 2008/03/30 v1.1d Input encoding file )) \@indexfile=\write3 \openout3 = `Rd2.idx'. Writing index file Rd2.idx (./Rd2.aux) \openout1 = `Rd2.aux'. LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 7. LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 7. LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 7. LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 7. LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 7. LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 7. LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 7. LaTeX Font Info: Try loading font information for TS1+cmr on input line 7. (/usr/local/texlive/2012/texmf-dist/tex/latex/base/ts1cmr.fd File: ts1cmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions ) LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Checking defaults for PD1/pdf/m/n on input line 7. LaTeX Font Info: ... okay on input line 7. LaTeX Font Info: Try loading font information for T1+ptm on input line 7. (/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/t1ptm.fd File: t1ptm.fd 2001/06/04 font definitions for T1/ptm. ) (/usr/local/texlive/2012/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] \scratchcounter=\count104 \scratchdimen=\dimen107 \scratchbox=\box30 \nofMPsegments=\count105 \nofMParguments=\count106 \everyMPshowfont=\toks20 \MPscratchCnt=\count107 \MPscratchDim=\dimen108 \MPnumerator=\count108 \makeMPintoPDFobject=\count109 \everyMPtoPDFconversion=\toks21 ) \AtBeginShipoutBox=\box31 Package hyperref Info: Link coloring ON on input line 7. (/usr/local/texlive/2012/texmf-dist/tex/latex/hyperref/nameref.sty Package: nameref 2010/04/30 v2.40 Cross-referencing by name of section (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/gettitlestring.sty Package: gettitlestring 2010/12/03 v1.4 Cleanup title references (HO) ) \c@section@level=\count110 ) LaTeX Info: Redefining \ref on input line 7. LaTeX Info: Redefining \pageref on input line 7. LaTeX Info: Redefining \nameref on input line 7. (./Rd2.out) (./Rd2.out) \@outlinefile=\write4 \openout4 = `Rd2.out'. LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <24.88> not available (Font) Font shape `T1/ptm/b/n' tried instead on input line 8. LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <10> not available (Font) Font shape `T1/ptm/b/n' tried instead on input line 10. LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <20.74> not available (Font) Font shape `T1/ptm/b/n' tried instead on input line 10. LaTeX Font Info: Try loading font information for T1+pcr on input line 20. (/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/t1pcr.fd File: t1pcr.fd 2001/06/04 font definitions for T1/pcr. ) LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <14.4> not available (Font) Font shape `T1/ptm/b/n' tried instead on input line 26. LaTeX Font Info: Try loading font information for T1+phv on input line 26. (/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/t1phv.fd File: t1phv.fd 2001/06/04 scalable font definitions for T1/phv. ) (./Rd2.toc LaTeX Font Info: External font `cmex10' loaded for size (Font) <7> on input line 1. LaTeX Font Info: External font `cmex10' loaded for size (Font) <5> on input line 1. ) \tf@toc=\write5 \openout5 = `Rd2.toc'. (/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def File: utf8.def 2008/04/05 v1.1m UTF-8 support for inputenc ) Overfull \vbox (32.37697pt too high) has occurred while \output is active [] [1 {/usr/local/texlive/2012/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def File: utf8.def 2008/04/05 v1.1m UTF-8 support for inputenc ) (./Rd2.ind [2] LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <12> not available (Font) Font shape `T1/ptm/b/n' tried instead on input line 3. LaTeX Font Info: Font shape `T1/pcr/m/it' in size <10> not available (Font) Font shape `T1/pcr/m/sl' tried instead on input line 17. [3 ]) Package atveryend Info: Empty hook `BeforeClearDocument' on input line 102. Package atveryend Info: Empty hook `AfterLastShipout' on input line 102. (./Rd2.aux) Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 102. Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 102. Package rerunfilecheck Info: File `Rd2.out' has not changed. (rerunfilecheck) Checksum: 8BEB06E511E44DC949AB62B4C85DE59E;144. Package atveryend Info: Empty hook `AtVeryVeryEnd' on input line 102. ) Here is how much of TeX's memory you used: 6197 strings out of 493488 88545 string characters out of 3141326 166549 words of memory out of 3000000 9384 multiletter control sequences out of 15000+200000 42055 words of font info for 53 fonts, out of 3000000 for 9000 957 hyphenation exceptions out of 8191 38i,5n,27p,302b,435s stack positions out of 5000i,500n,10000p,200000b,50000s pdfTeX warning (dest): name{Rfn.} has been referenced but does not exist , replaced by a fixed one {/usr/local/texlive/2012/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on Rd2.pdf (3 pages, 78732 bytes). PDF statistics: 98 PDF objects out of 1000 (max. 8388607) 84 compressed objects within 1 object stream 23 named destinations out of 1000 (max. 500000) 25 words of extra memory for PDF output out of 10000 (max. 10000000)